Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0780713.1a with 2 members (ral guanine nucleotide dissociation)

Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda / Mandibulata /

... /

Pancrustacea / Crustacea / Multicrustacea /

Podoplea

Completeness score: 1.00

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This HOG has 55 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0780713.4a.3b.6b	199	107	ral guanine nucleotide dissociation
2	HOG:E0780713.4a.3d	193	165	ral guanine nucleotide dissociation
3	HOG:E0780713.1a	159	100	ral guanine nucleotide dissociation
4	HOG:E0780713.4a.3d.8a	73	50	ral guanine nucleotide dissociation
5	HOG:E0780713.4a.3a	58	39	ral guanine nucleotide dissociation
6	HOG:E0780713	48	473	ral guanine nucleotide dissociation
7	HOG:E0780713.4a.3b	19	130	ral guanine nucleotide dissociation
8	HOG:E0780713.4a.3d.10b	14	7	ral guanine nucleotide dissociation
9	HOG:E0780713.4a.3a.2a	8	4	ral guanine nucleotide dissociation
10	HOG:E0780713.4a.3d.9a	6	3	ral guanine nucleotide dissociation
11	HOG:E0780713.4a.3d.8a.5a	6	3	ral guanine nucleotide dissociation
12	HOG:E0780713.4a.3b.3b	6	3	ral guanine nucleotide dissociation
13	HOG:E0780713.4a.3a.1b	6	3	ral guanine nucleotide dissociation
14	HOG:E0780713.1a.2a	6	3	ral guanine nucleotide dissociation
15	HOG:E0780713.4b.5b	4	2	ral guanine nucleotide dissociation
16	HOG:E0780713.4b.5a	4	2	ral guanine nucleotide dissociation
17	HOG:E0780713.4a.3d.8a.5b	4	2	ral guanine nucleotide dissociation
18	HOG:E0780713.4a.3b.3a	4	2	ral guanine nucleotide dissociation
19	HOG:E0780713.4a.3a.1a	4	2	ral guanine nucleotide dissociation
20	HOG:E0792632.1a.1a	3	43	ral guanine nucleotide dissociation stimulator-like
21	HOG:E0794947.1a	2	35	Ras-GEF domain-containing protein
22	HOG:E0780713.4b.4b	2	1	ral guanine nucleotide dissociation
23	HOG:E0780713.4b.4a	2	1	ral guanine nucleotide dissociation
24	HOG:E0780713.4a.3d.8b	2	1	ral guanine nucleotide dissociation
25	HOG:E0780713.4a.3d.8a.6b	2	1	ral guanine nucleotide dissociation

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